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Home » Breakfast recipes

by Mimi · 8 Comments

100% Whole Wheat Banana Blueberry Muffins

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Inspired by my classic blueberry muffins recipe, these healthy blueberry banana muffins are made with 100% whole wheat flour and no refined sugar! These muffins are healthy + delicious + quick + easy ANNND freezer friendly!

whole wheat blueberry banana muffins on table (11)

how to make whole wheat banana blueberry muffins

These muffins are so so easy and quick to whip up. The process just involves whisking dry ingredients together, whisking wet ingredients together, combining, and folding in blueberries!

whole wheat blueberry banana muffins wet ingredients whisked together in bowl
whole wheat blueberry banana muffin batter in bowl

working with whole wheat flour

Whole wheat flour has a distinct taste and is definitely not for everyone. The nice thing about this recipe is that you can slowly wean yourself into the world of whole wheat flour - meaning if you don't really like the flavor of it, you can use a mix of all-purpose and whole wheat flour to minimize the taste. These muffins work with any ratio of all-purpose to whole wheat flour and can even be made with just all-purpose if you prefer.

spacing the muffins in the tin

This recipe calls for filling every other cup of the muffin tin with batter, so the muffins should basically look like this:

whole wheat blueberry banana muffin batter portioned into muffin tin every other cup

Alternating the cups helps with air circulation, which ultimately leads to taller and better domed muffin tops! When I tested this recipe in a tin side by side, the muffins were noticeably flatter. They still work but I prefer this method!

This batter can easily be left out for 1 hour, so if you only have 1 muffin tin, you can bake the muffins off in batches. Just make sure the tin has cooled completely before you add the next batch of muffins and remember to reset your oven to 400F for the first 8 minutes of baking.

whole wheat blueberry banana muffins on table (7)

baking muffins in 2 different temperatures

This recipe starts off with a bake at 400F and then finishes baking at 375F. This initial high heat helps push the muffin batter up, while the lower heat helps bake the muffins through without burning the outside. This combination of heats leads to a more tender and fluffy muffin!

Mimi's tips

  • measuring flour: I say this in almost every recipe, but it's so very important! Measure flour by weight whenever you can as it's the most accurate way of measuring. If you don't own a food scale and you prefer to use cups, make sure to measure flour using the "spoon and level" method: lightly spoon the flour into your measuring cup then use a flat utensil to level off the top. Don't scoop the cup directly into the bag of flour as this can pack in extra weight and lead to dry muffins!
  • maple syrup: Whenever you're baking, it's best to use pure maple syrup (avoid table syrup!) Pure maple syrup has a much richer and better flavor while table syrup is typically just made up of sugar, coloring, and flavoring.
  • measuring bananas: Although I say below that you'll need about 3 bananas for this recipe, it's important to actually measure the mashed bananas to ensure you have enough.
  • mixing: Avoid overmixing the muffin batter as this can lead to tough and dry muffins!
whole wheat blueberry banana muffins on table (2)

how to store these muffins

These muffins store just as well as regular muffins! They'll keep for up to 3 days at room temperature or up to 1 week in the fridge.

To freeze, simply transfer your baked and cooled muffins to a freezer bag, push out the air, and seal. Then freeze! These muffins will keep for about 3 to 4 months in the freezer.

whole wheat blueberry banana muffins on table (14)

Other muffin recipes for you!

• banana muffins
• blueberry muffins
• carrot muffins
• chocolate chip muffins

Lastly, if you made this or any of my recipes, be sure to leave a comment and review below! I love hearing your thoughts! Also tag me on Instagram @eatsdelightfulblog so I can see what you're making.

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whole wheat blueberry banana muffins on table

100% Whole Wheat Blueberry Banana Muffins


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4.7 from 12 reviews

  • Author: Mimi
  • Total Time: 55 minutes
  • Yield: 12-14 muffins
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Description

Inspired by my classic blueberry muffins recipe, these healthy blueberry banana muffins are made with 100% whole wheat flour and no refined sugar! These muffins are healthy + delicious + quick + easy ANNND freezer friendly! 


Ingredients

  • 2 & ½ cups (315g) whole wheat flour, spooned and leveled
  • 2 teaspoons baking powder
  • ½ teaspoon baking soda
  • ½ teaspoon salt
  • 2 large eggs
  • â…“ cup (80mL) vegetable oil (or any neutral flavored oil)
  • ½ cup (120mL) pure maple syrup
  • ¼ cup (60mL) milk (dairy free also works)
  • ¼ cup (60g) plain yogurt (dairy free also works)
  • 1 teaspoon pure vanilla extract
  • 1 & ¼ cups (300g) mashed overripe bananas (about 3 medium bananas - measure the mashed bananas!)
  • 1 cup (150g) fresh blueberries

Instructions

  1. Preheat your oven to 400°F. Line 2 (12 count) muffin tins with 6 paper liners each, alternating so that you have 1 cup lined and 1 cup empty (see above for visual). Set aside.
    *
    If you only own 1 muffin tin, you can bake the muffins in batches - just allow the muffin tin to cool completely to room temperature before adding the next round of muffins. You can bake all the muffins in the tin at once, but muffins baked right next to each other will have flatter tops.
  2. In a medium bowl, whisk together flour, baking powder, baking soda, and salt to combine. Set aside.
  3. In a large bowl, whisk together all the remaining ingredients (minus the blueberries). So eggs, oil, maple syrup, milk, yogurt, vanilla, and bananas.
  4. Add the dry ingredients to the wet ingredients and mix together. Stop mixing right before the batter is fully combined and streak free, then add in the blueberries. Fold together until the blueberries are well distributed and the batter is streak free. Take care not to over mix!
  5. Portion the muffin batter out into the prepared muffin cups, filling each liner to the very top. Sprinkle some more blueberries on top if you'd like.
  6. Bake the muffins in the center of your preheated 400F oven for 8 minutes. Without opening the oven door, turn the heat down to 375F and continue baking for another 15 to 20 minutes or until golden brown on top and a skewer inserted into the center of a muffin comes out with a few moist crumbs but no wet batter.
  7. Cool the muffins for about 5 to 10 minutes in the tray, then move onto a wire rack to finish cooling. Serve warm or at room temperature.

Equipment

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  • Prep Time: 15 minutes
  • Cook Time: 25 minutes

Did you make this recipe?

Tag me @eatsdelightfulblog on Instagram - I love seeing what you're making!

Enjoy!


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Reader Interactions

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  1. Julia Williamson says

    June 28, 2026 at 6:23 pm

    These are great! I made them as written except I subbed avocado oil for vegetable oil. I love that they are made with whole wheat flour and no white sugar.

    Reply
  2. Veronica Maren Hackett says

    August 01, 2024 at 5:54 pm

    Turned out great! I subbed applesauce for the oil and they were perfect.

    Reply
  3. Michele says

    June 25, 2022 at 9:10 pm

    Loved these! I used olive oil.
    Also used unsweet apple sauce and three majool dates for the sweetener. Just added all the wet ingredients with dates into the blender and mixed into the dry.
    Yum!

    Reply
    • Mimi says

      June 27, 2022 at 8:49 pm

      Hey Michele! First of all, I'm so happy you loved them! Second of all, those tweaks sound absolutely amazing and I'm so giving them a try!!! 😊

      Reply
  4. Alise says

    October 01, 2021 at 12:49 am

    Just made these. Used maple syrup instead of honey. They were so tasty!!! Might try them again next week with AP flour as I’m not a huge fan of whole wheat

    Reply
  5. Katie says

    September 12, 2021 at 10:40 am

    These did not come out like the photo at all. They didn’t rise, they took more than 40 minutes to bake. No flavor. And the recipe says you can use frozen blueberries but I’m pretty sure that’s what caused all of the above issues. Super bummed I wasted all of these great ingredients.

    Reply
    • Mimi says

      September 13, 2021 at 11:00 pm

      Hey Katie. I'm so sorry to hear they didn't turn out! I actually always use frozen blueberries in my muffin recipes, and have never noticed a similar problem. I did update this recipe recently because I noticed the batter could be quite fussy to work with. Do you mind sharing if you used the old recipe (w/ 1 cup of milk) or the new one (1/2 cup of milk)?

      Reply
      • Alise says

        October 01, 2021 at 12:14 am

        Just made these. Used maple syrup instead of honey. They were so tasty!!! Might try them again next week with AP flour as I'm not a huge fan of whole wheat

        Reply

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Hi, I'm Mimi! I'm a former finance professional, turned full-time content creator. Welcome to my little corner of the internet!

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